/CEMT/methylation/B33199_1_lane_gembs

BACK

SAMPLE B33199_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27070576 21508162 79.45 %
NonRefCpG 272219 188420 69.22 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B33199_1_lane_gembs_coverage_refCpG.png ./IMG//B33199_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B33199_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B33199_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B33199_1_lane_gembs_quality_refcpg.png ./IMG//B33199_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B33199_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5708602 10.73 % 2542478 5.62 % 54564 10.59 % 18678 4.62 %
Intermediate (0.3-0.7) 8805207 16.55 % 6323716 13.98 % 90536 17.57 % 54856 13.57 %
Methylated (0.7-1) 38681122 72.72 % 36378642 80.40 % 370231 71.84 % 330632 81.81 %
Median Methylation 0.860 0.890 0.860 0.890