/CEMT/mapping_coverage/B33202_1_lane_gembs
BACK
SAMPLE B33202_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
847878784 |
100% |
109291660569 |
100% |
| Mapped |
839583713 |
99.02 % |
108047399919 |
98.86 % |
| Passed |
662527870 |
78.14 % |
81489023469 |
74.56 % |
| NotPassed |
177055843 |
20.88 % |
26558376450 |
24.30 % |
| |
|
|
|
|
| LowMAPQ |
97375266 |
11.48 % |
14606289900 |
13.36 % |
| MateUnmapped |
8295071 |
0.98 % |
1244260650 |
1.14 % |
| Duplicate |
69506010 |
8.20 % |
10425901500 |
9.54 % |
| BadOrientation |
66 |
0.00 % |
9900 |
0.00 % |
| LargeInsertSize |
10346 |
0.00 % |
1551900 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10164155 |
1.20 % |
1524623250 |
1.40 % |
| Unmapped |
8295071 |
0.98 % |
1244260650 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99370946550 |
100% |
| Passed |
76352711320 |
76.84 % |
| Trimmed |
2843287983 |
2.86 % |
| Clipped |
219726867 |
0.22 % |
| Overlapping |
17662196214 |
17.77 % |
| LowQuality |
2293024166 |
2.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |