/CEMT/methylation/B33202_1_lane_gembs

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SAMPLE B33202_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27106918 20392053 75.23 %
NonRefCpG 284323 174908 61.52 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B33202_1_lane_gembs_coverage_refCpG.png ./IMG//B33202_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B33202_1_lane_gembs_coverage_nonRefCpG.png ./IMG//B33202_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B33202_1_lane_gembs_quality_refcpg.png ./IMG//B33202_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B33202_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7138521 13.50 % 3754031 8.49 % 86370 16.08 % 34761 8.63 %
Intermediate (0.3-0.7) 13113262 24.79 % 9894366 22.37 % 141892 26.41 % 95109 23.61 %
Methylated (0.7-1) 32642563 61.71 % 30573142 69.14 % 309013 57.51 % 272905 67.76 %
Median Methylation 0.790 0.830 0.760 0.820