/EXTERNAL Roadmap/methylation/K012802_1_lane_gembs

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SAMPLE K012802_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24946881 570808 2.29 %
NonRefCpG 486409 2902 0.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012802_1_lane_gembs_coverage_refCpG.png ./IMG//K012802_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012802_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012802_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012802_1_lane_gembs_quality_refcpg.png ./IMG//K012802_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012802_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8240809 19.51 % 77086 4.15 % 312141 36.97 % 1406 8.90 %
Intermediate (0.3-0.7) 15068616 35.67 % 385679 20.79 % 294810 34.92 % 3626 22.95 %
Methylated (0.7-1) 18932179 44.82 % 1392599 75.06 % 237327 28.11 % 10767 68.15 %
Median Methylation 0.650 0.850 0.440 0.820