/EXTERNAL Roadmap/K012816_1_lane_gembs

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SAMPLE K012816_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2089034848 100.00 % 1044517424 100.00 % 1044517424 100.00 %
General Reads 1945457156 93.13 % 974917290 93.34 % 970539866 92.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6873450 0.33 % 3442105 0.33 % 3431345 0.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 136704242 6.54 % 66158029 6.33 % 70546213 6.75 %
Bisulfite_reads C2T 994444361 47.60 % 498373209 47.71 % 496071152 47.49 %
Bisulfite_reads G2A 957886245 45.85 % 479986186 45.95 % 477900059 45.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 562313293
Average Unique 53.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 80716234964 38.26 % 31764594383 30.11 % 48951640581 46.40 %
Base Counts Overall C 22594897920 10.71 % 2072241043 1.96 % 20522656877 19.45 %
Base Counts Overall G 25299786989 11.99 % 22104322402 20.95 % 3195464587 3.03 %
Base Counts Overall T 78885781229 37.39 % 47832773128 45.34 % 31053008101 29.44 %
Base Counts Overall N 3495818546 1.66 % 1722328868 1.63 % 1773489678 1.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9817730571234937
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 688795563



Mapping Quality

Mapping Quality Histogram
K012816_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012816_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012816_1969459