/EXTERNAL Roadmap/mapping_coverage/K012816_1_lane_gembs
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SAMPLE K012816_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1939513802 |
100% |
171364797157 |
100% |
| Mapped |
1882937205 |
97.08 % |
165707137457 |
96.70 % |
| Passed |
1127482042 |
58.13 % |
90161621157 |
52.61 % |
| NotPassed |
755455163 |
38.95 % |
75545516300 |
44.08 % |
| |
|
|
|
|
| LowMAPQ |
627755276 |
32.37 % |
62775527600 |
36.63 % |
| MateUnmapped |
56576597 |
2.92 % |
5657659700 |
3.30 % |
| Duplicate |
6731150 |
0.35 % |
673115000 |
0.39 % |
| BadOrientation |
312 |
0.00 % |
31200 |
0.00 % |
| LargeInsertSize |
62640 |
0.00 % |
6264000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
120905785 |
6.23 % |
12090578500 |
7.06 % |
| Unmapped |
56576597 |
2.92 % |
5657659700 |
3.30 % |
Base Level Counts
| Bases |
# |
% |
| Total |
112726602600 |
100% |
| Passed |
82553834940 |
73.23 % |
| Trimmed |
4778946701 |
4.24 % |
| Clipped |
953590782 |
0.85 % |
| Overlapping |
21611390661 |
19.17 % |
| LowQuality |
2828839516 |
2.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |