/EXTERNAL Roadmap/methylation/K012816_1_lane_gembs

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SAMPLE K012816_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26796129 22257316 83.06 %
NonRefCpG 268764 188549 70.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012816_1_lane_gembs_coverage_refCpG.png ./IMG//K012816_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012816_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012816_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012816_1_lane_gembs_quality_refcpg.png ./IMG//K012816_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012816_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6531975 12.38 % 4167460 8.94 % 49509 9.78 % 19546 4.91 %
Intermediate (0.3-0.7) 8420806 15.97 % 6748462 14.48 % 88736 17.53 % 55034 13.84 %
Methylated (0.7-1) 37790776 71.65 % 35683319 76.57 % 368014 72.69 % 323156 81.25 %
Median Methylation 0.850 0.870 0.850 0.880