/EXTERNAL Roadmap/K012800_1_lane_gembs

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SAMPLE K012800_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1141159424 100.00 % 570579712 100.00 % 570579712 100.00 %
General Reads 1078770775 94.53 % 541395128 94.89 % 537375647 94.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5393442 0.47 % 2704609 0.47 % 2688833 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 56995207 4.99 % 26479975 4.64 % 30515232 5.35 %
Bisulfite_reads C2T 551302632 48.31 % 276625869 48.48 % 274676763 48.14 %
Bisulfite_reads G2A 532861585 46.69 % 267473868 46.88 % 265387717 46.51 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 366424241
Average Unique 64.22 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44803096065 38.87 % 18451635798 32.02 % 26351460267 45.73 %
Base Counts Overall C 11650095258 10.11 % 639759670 1.11 % 11010335588 19.11 %
Base Counts Overall G 12427555305 10.78 % 11457934502 19.88 % 969620803 1.68 %
Base Counts Overall T 44900724273 38.96 % 26312593722 45.66 % 18588130551 32.26 %
Base Counts Overall N 1475630923 1.28 % 766627220 1.33 % 709003703 1.23 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9866402316029692
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 428916194



Mapping Quality

Mapping Quality Histogram
K012800_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012800_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012800_1969443