/EXTERNAL Roadmap/mapping_coverage/K012800_1_lane_gembs
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SAMPLE K012800_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1075024222 |
100% |
96086489873 |
100% |
| Mapped |
1047594845 |
97.45 % |
93343552173 |
97.15 % |
| Passed |
729753627 |
67.88 % |
61559430373 |
64.07 % |
| NotPassed |
317841218 |
29.57 % |
31784121800 |
33.08 % |
| |
|
|
|
|
| LowMAPQ |
252364204 |
23.48 % |
25236420400 |
26.26 % |
| MateUnmapped |
27429377 |
2.55 % |
2742937700 |
2.85 % |
| Duplicate |
3905932 |
0.36 % |
390593200 |
0.41 % |
| BadOrientation |
170 |
0.00 % |
17000 |
0.00 % |
| LargeInsertSize |
15202 |
0.00 % |
1520200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
61555710 |
5.73 % |
6155571000 |
6.41 % |
| Unmapped |
27429377 |
2.55 % |
2742937700 |
2.85 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72955193000 |
100% |
| Passed |
56281007933 |
77.14 % |
| Trimmed |
3196959262 |
4.38 % |
| Clipped |
341060905 |
0.47 % |
| Overlapping |
11054701722 |
15.15 % |
| LowQuality |
2081463178 |
2.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |