/EXTERNAL Roadmap/methylation/K012800_1_lane_gembs

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SAMPLE K012800_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26380703 13075666 49.57 %
NonRefCpG 286246 106957 37.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012800_1_lane_gembs_coverage_refCpG.png ./IMG//K012800_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012800_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012800_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012800_1_lane_gembs_quality_refcpg.png ./IMG//K012800_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012800_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9063213 18.05 % 3874911 12.23 % 127764 23.97 % 43793 15.25 %
Intermediate (0.3-0.7) 17021228 33.91 % 9519355 30.04 % 186851 35.06 % 93837 32.67 %
Methylated (0.7-1) 24118154 48.04 % 18292786 57.73 % 218395 40.97 % 149564 52.08 %
Median Methylation 0.680 0.760 0.610 0.710