/EXTERNAL Roadmap/K012805_1_lane_gembs

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SAMPLE K012805_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1923796190 100.00 % 961898095 100.00 % 961898095 100.00 %
General Reads 1766066237 91.80 % 892441219 92.78 % 873625018 90.82 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7485631 0.39 % 3794161 0.39 % 3691470 0.38 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 150244322 7.81 % 65662715 6.83 % 84581607 8.79 %
Bisulfite_reads C2T 901923295 46.88 % 455732103 47.38 % 446191192 46.39 %
Bisulfite_reads G2A 871628573 45.31 % 440503277 45.80 % 431125296 44.82 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 539964323
Average Unique 56.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74438003375 38.31 % 29049965181 29.90 % 45388038194 46.72 %
Base Counts Overall C 20567261582 10.59 % 1699369370 1.75 % 18867892212 19.42 %
Base Counts Overall G 23128697186 11.90 % 20339587260 20.94 % 2789109926 2.87 %
Base Counts Overall T 73012916755 37.58 % 44445285846 45.75 % 28567630909 29.41 %
Base Counts Overall N 3156536292 1.62 % 1617499938 1.66 % 1539036354 1.58 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9823062154574679
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 645673111



Mapping Quality

Mapping Quality Histogram
K012805_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012805_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012805_1969448