/EXTERNAL Roadmap/methylation/K012805_1_lane_gembs

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SAMPLE K012805_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26670472 20991900 78.71 %
NonRefCpG 212216 127656 60.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012805_1_lane_gembs_coverage_refCpG.png ./IMG//K012805_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012805_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012805_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012805_1_lane_gembs_quality_refcpg.png ./IMG//K012805_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012805_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10048408 19.13 % 7504883 16.56 % 75527 19.01 % 42140 14.66 %
Intermediate (0.3-0.7) 20395002 38.83 % 17475938 38.55 % 164126 41.31 % 119807 41.68 %
Methylated (0.7-1) 22081167 42.04 % 20349762 44.89 % 157616 39.67 % 125492 43.66 %
Median Methylation 0.630 0.650 0.610 0.640