/EXTERNAL Roadmap/K012801_1_lane_gembs

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SAMPLE K012801_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1109943482 100.00 % 554971741 100.00 % 554971741 100.00 %
General Reads 1043961217 94.06 % 523364242 94.30 % 520596975 93.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7678949 0.69 % 3847228 0.69 % 3831721 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 58303316 5.25 % 27760271 5.00 % 30543045 5.50 %
Bisulfite_reads C2T 534607420 48.17 % 267973291 48.29 % 266634129 48.04 %
Bisulfite_reads G2A 517032746 46.58 % 259238179 46.71 % 257794567 46.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 341664396
Average Unique 61.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43160525099 38.50 % 17212562322 30.71 % 25947962777 46.29 %
Base Counts Overall C 11672821785 10.41 % 785019446 1.40 % 10887802339 19.42 %
Base Counts Overall G 12688329575 11.32 % 11465379683 20.45 % 1222949892 2.18 %
Base Counts Overall T 43127705986 38.47 % 25840354145 46.10 % 17287351841 30.84 %
Base Counts Overall N 1454909237 1.30 % 748830245 1.34 % 706078992 1.26 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9850485989160471
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 405135668



Mapping Quality

Mapping Quality Histogram
K012801_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012801_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012801_1969444