/EXTERNAL Roadmap/mapping_coverage/K012801_1_lane_gembs
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SAMPLE K012801_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1040814295 |
100% |
92768048614 |
100% |
| Mapped |
1013316785 |
97.36 % |
90018297614 |
97.04 % |
| Passed |
680857723 |
65.42 % |
56772391414 |
61.20 % |
| NotPassed |
332459062 |
31.94 % |
33245906200 |
35.84 % |
| |
|
|
|
|
| LowMAPQ |
275841748 |
26.50 % |
27584174800 |
29.73 % |
| MateUnmapped |
27497510 |
2.64 % |
2749751000 |
2.96 % |
| Duplicate |
3327711 |
0.32 % |
332771100 |
0.36 % |
| BadOrientation |
166 |
0.00 % |
16600 |
0.00 % |
| LargeInsertSize |
19822 |
0.00 % |
1982200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
53269615 |
5.12 % |
5326961500 |
5.74 % |
| Unmapped |
27497510 |
2.64 % |
2749751000 |
2.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68067551000 |
100% |
| Passed |
51712085457 |
75.97 % |
| Trimmed |
2945004174 |
4.33 % |
| Clipped |
385032693 |
0.57 % |
| Overlapping |
10910126893 |
16.03 % |
| LowQuality |
2115301783 |
3.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |