/EXTERNAL Roadmap/methylation/K012801_1_lane_gembs

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SAMPLE K012801_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26374764 15659705 59.37 %
NonRefCpG 295244 137477 46.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012801_1_lane_gembs_coverage_refCpG.png ./IMG//K012801_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012801_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012801_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012801_1_lane_gembs_quality_refcpg.png ./IMG//K012801_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012801_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6918801 13.54 % 2610665 7.26 % 85325 15.46 % 24537 7.32 %
Intermediate (0.3-0.7) 15182202 29.71 % 9397753 26.13 % 172095 31.19 % 91025 27.15 %
Methylated (0.7-1) 29005964 56.76 % 23950296 66.60 % 294369 53.35 % 219731 65.53 %
Median Methylation 0.750 0.800 0.720 0.800