/EXTERNAL Roadmap/K012810_1_lane_gembs

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SAMPLE K012810_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1597038476 100.00 % 798519238 100.00 % 798519238 100.00 %
General Reads 1491512663 93.39 % 745984368 93.42 % 745528295 93.36 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6613984 0.41 % 3309431 0.41 % 3304553 0.41 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 98911829 6.19 % 49225439 6.16 % 49686390 6.22 %
Bisulfite_reads C2T 761198810 47.66 % 380714963 47.68 % 380483847 47.65 %
Bisulfite_reads G2A 736927837 46.14 % 368578836 46.16 % 368349001 46.13 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 446096276
Average Unique 55.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 61932254589 38.40 % 23943184583 29.69 % 37989070006 47.10 %
Base Counts Overall C 17013624588 10.55 % 1309223813 1.62 % 15704400775 19.47 %
Base Counts Overall G 19322154389 11.98 % 17087658947 21.19 % 2234495442 2.77 %
Base Counts Overall T 60781688224 37.68 % 37175875958 46.10 % 23605812266 29.27 %
Base Counts Overall N 2251164286 1.40 % 1134499737 1.41 % 1116664549 1.38 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9815851267037147
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 537565332



Mapping Quality

Mapping Quality Histogram
K012810_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012810_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012810_1969453