/EXTERNAL Roadmap/mapping_coverage/K012810_1_lane_gembs
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SAMPLE K012810_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1486538335 |
100% |
130321465160 |
100% |
| Mapped |
1445751054 |
97.26 % |
126242737060 |
96.87 % |
| Passed |
892717910 |
60.05 % |
70939422660 |
54.43 % |
| NotPassed |
553033144 |
37.20 % |
55303314400 |
42.44 % |
| |
|
|
|
|
| LowMAPQ |
472840316 |
31.81 % |
47284031600 |
36.28 % |
| MateUnmapped |
40787281 |
2.74 % |
4078728100 |
3.13 % |
| Duplicate |
5540070 |
0.37 % |
554007000 |
0.43 % |
| BadOrientation |
302 |
0.00 % |
30200 |
0.00 % |
| LargeInsertSize |
38062 |
0.00 % |
3806200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
74614394 |
5.02 % |
7461439400 |
5.73 % |
| Unmapped |
40787281 |
2.74 % |
4078728100 |
3.13 % |
Base Level Counts
| Bases |
# |
% |
| Total |
89253839400 |
100% |
| Passed |
64899660596 |
72.71 % |
| Trimmed |
3758221658 |
4.21 % |
| Clipped |
685343718 |
0.77 % |
| Overlapping |
17629073022 |
19.75 % |
| LowQuality |
2281540406 |
2.56 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |