/EXTERNAL Roadmap/methylation/K012810_1_lane_gembs

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SAMPLE K012810_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26675444 18843232 70.64 %
NonRefCpG 246149 133233 54.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012810_1_lane_gembs_coverage_refCpG.png ./IMG//K012810_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012810_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012810_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012810_1_lane_gembs_quality_refcpg.png ./IMG//K012810_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012810_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11920758 22.73 % 8261346 19.50 % 106693 23.01 % 58752 18.59 %
Intermediate (0.3-0.7) 19637546 37.44 % 15509672 36.61 % 182757 39.41 % 123138 38.97 %
Methylated (0.7-1) 20889384 39.83 % 18597283 43.89 % 174325 37.59 % 134118 42.44 %
Median Methylation 0.600 0.640 0.580 0.630