/EXTERNAL Roadmap/mapping_coverage/K012797_1_lane_gembs
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SAMPLE K012797_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
356122644 |
100% |
31248887136 |
100% |
| Mapped |
343442448 |
96.44 % |
29980867536 |
95.94 % |
| Passed |
216728171 |
60.86 % |
17309439836 |
55.39 % |
| NotPassed |
126714277 |
35.58 % |
12671427700 |
40.55 % |
| |
|
|
|
|
| LowMAPQ |
105878726 |
29.73 % |
10587872600 |
33.88 % |
| MateUnmapped |
12680196 |
3.56 % |
1268019600 |
4.06 % |
| Duplicate |
704328 |
0.20 % |
70432800 |
0.23 % |
| BadOrientation |
34 |
0.00 % |
3400 |
0.00 % |
| LargeInsertSize |
8776 |
0.00 % |
877600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20122413 |
5.65 % |
2012241300 |
6.44 % |
| Unmapped |
12680196 |
3.56 % |
1268019600 |
4.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
21646562000 |
100% |
| Passed |
15882362622 |
73.37 % |
| Trimmed |
914373650 |
4.22 % |
| Clipped |
145242123 |
0.67 % |
| Overlapping |
4191880041 |
19.37 % |
| LowQuality |
512703564 |
2.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |