/EXTERNAL Roadmap/mapping_coverage/K012798_1_lane_gembs
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SAMPLE K012798_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
362252293 |
100% |
31640342134 |
100% |
| Mapped |
353663503 |
97.63 % |
30781463134 |
97.29 % |
| Passed |
233079509 |
64.34 % |
18723063734 |
59.17 % |
| NotPassed |
120583994 |
33.29 % |
12058399400 |
38.11 % |
| |
|
|
|
|
| LowMAPQ |
102503864 |
28.30 % |
10250386400 |
32.40 % |
| MateUnmapped |
8588790 |
2.37 % |
858879000 |
2.71 % |
| Duplicate |
734565 |
0.20 % |
73456500 |
0.23 % |
| BadOrientation |
100 |
0.00 % |
10000 |
0.00 % |
| LargeInsertSize |
7518 |
0.00 % |
751800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17337947 |
4.79 % |
1733794700 |
5.48 % |
| Unmapped |
8588790 |
2.37 % |
858879000 |
2.71 % |
Base Level Counts
| Bases |
# |
% |
| Total |
23285458200 |
100% |
| Passed |
17220961971 |
73.96 % |
| Trimmed |
989501372 |
4.25 % |
| Clipped |
126679033 |
0.54 % |
| Overlapping |
4435715433 |
19.05 % |
| LowQuality |
512600391 |
2.20 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |