/EXTERNAL Roadmap/methylation/K012798_1_lane_gembs

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SAMPLE K012798_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25562770 2652554 10.38 %
NonRefCpG 454130 18641 4.10 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012798_1_lane_gembs_coverage_refCpG.png ./IMG//K012798_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012798_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012798_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012798_1_lane_gembs_quality_refcpg.png ./IMG//K012798_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012798_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5880364 13.00 % 164572 2.38 % 232610 28.79 % 3954 5.82 %
Intermediate (0.3-0.7) 14023962 31.01 % 1278542 18.53 % 258679 32.02 % 13660 20.11 %
Methylated (0.7-1) 25322330 55.99 % 5457488 79.09 % 316575 39.19 % 50308 74.07 %
Median Methylation 0.740 0.860 0.580 0.850