/EXTERNAL Roadmap/K012812_1_lane_gembs

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SAMPLE K012812_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1486716426 100.00 % 743358213 100.00 % 743358213 100.00 %
General Reads 1386587016 93.27 % 694793453 93.47 % 691793563 93.06 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10237958 0.69 % 5121175 0.69 % 5116783 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 89891452 6.05 % 43443585 5.84 % 46447867 6.25 %
Bisulfite_reads C2T 708131259 47.63 % 354782155 47.73 % 353349104 47.53 %
Bisulfite_reads G2A 688693715 46.32 % 345132473 46.43 % 343561242 46.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 377990691
Average Unique 50.85 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57275963626 38.14 % 22498677335 29.97 % 34777286291 46.32 %
Base Counts Overall C 16311541802 10.86 % 1474397669 1.96 % 14837144133 19.76 %
Base Counts Overall G 17843403720 11.88 % 15681796069 20.89 % 2161607651 2.88 %
Base Counts Overall T 55955419632 37.26 % 33940277151 45.21 % 22015142481 29.32 %
Base Counts Overall N 2772030246 1.85 % 1484031289 1.98 % 1287998957 1.72 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9849897050320456
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 472162656



Mapping Quality

Mapping Quality Histogram
K012812_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012812_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012812_1969455