/EXTERNAL Roadmap/mapping_coverage/K012812_1_lane_gembs
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SAMPLE K012812_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1380851776 |
100% |
122012880580 |
100% |
| Mapped |
1339228032 |
96.99 % |
117850506180 |
96.59 % |
| Passed |
750008501 |
54.31 % |
58928553080 |
48.30 % |
| NotPassed |
589219531 |
42.67 % |
58921953100 |
48.29 % |
| |
|
|
|
|
| LowMAPQ |
461519600 |
33.42 % |
46151960000 |
37.83 % |
| MateUnmapped |
41623744 |
3.01 % |
4162374400 |
3.41 % |
| Duplicate |
6438587 |
0.47 % |
643858700 |
0.53 % |
| BadOrientation |
204 |
0.00 % |
20400 |
0.00 % |
| LargeInsertSize |
52188 |
0.00 % |
5218800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
121208952 |
8.78 % |
12120895200 |
9.93 % |
| Unmapped |
41623744 |
3.01 % |
4162374400 |
3.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74985012400 |
100% |
| Passed |
54073246357 |
72.11 % |
| Trimmed |
3136518222 |
4.18 % |
| Clipped |
649695354 |
0.87 % |
| Overlapping |
15406763966 |
20.55 % |
| LowQuality |
1718788501 |
2.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |