/EXTERNAL Roadmap/methylation/K012812_1_lane_gembs

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SAMPLE K012812_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26588326 19373023 72.86 %
NonRefCpG 277176 163529 59.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012812_1_lane_gembs_coverage_refCpG.png ./IMG//K012812_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012812_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012812_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012812_1_lane_gembs_quality_refcpg.png ./IMG//K012812_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012812_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4924333 9.47 % 1929003 4.61 % 52052 10.02 % 10969 3.02 %
Intermediate (0.3-0.7) 11151643 21.45 % 7846702 18.77 % 117186 22.56 % 66029 18.17 %
Methylated (0.7-1) 35921789 69.08 % 32023898 76.61 % 350169 67.42 % 286461 78.81 %
Median Methylation 0.820 0.850 0.820 0.860