/EXTERNAL Roadmap/mapping_coverage/K012804_1_lane_gembs
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SAMPLE K012804_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1738838457 |
100% |
152913071566 |
100% |
| Mapped |
1683969352 |
96.84 % |
147426161066 |
96.41 % |
| Passed |
968761774 |
55.71 % |
75905403266 |
49.64 % |
| NotPassed |
715207578 |
41.13 % |
71520757800 |
46.77 % |
| |
|
|
|
|
| LowMAPQ |
560706720 |
32.25 % |
56070672000 |
36.67 % |
| MateUnmapped |
54869105 |
3.16 % |
5486910500 |
3.59 % |
| Duplicate |
5885383 |
0.34 % |
588538300 |
0.38 % |
| BadOrientation |
300 |
0.00 % |
30000 |
0.00 % |
| LargeInsertSize |
57178 |
0.00 % |
5717800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
148557997 |
8.54 % |
14855799700 |
9.72 % |
| Unmapped |
54869105 |
3.16 % |
5486910500 |
3.59 % |
Base Level Counts
| Bases |
# |
% |
| Total |
96856274500 |
100% |
| Passed |
69682070844 |
71.94 % |
| Trimmed |
4057799321 |
4.19 % |
| Clipped |
767593374 |
0.79 % |
| Overlapping |
20183277860 |
20.84 % |
| LowQuality |
2165533101 |
2.24 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |