/EXTERNAL Roadmap/methylation/K012804_1_lane_gembs

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SAMPLE K012804_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26650592 20392186 76.52 %
NonRefCpG 255872 158904 62.10 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012804_1_lane_gembs_coverage_refCpG.png ./IMG//K012804_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012804_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012804_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012804_1_lane_gembs_quality_refcpg.png ./IMG//K012804_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012804_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11235615 21.42 % 8186081 18.40 % 102492 21.24 % 61083 17.18 %
Intermediate (0.3-0.7) 16437734 31.34 % 13484828 30.31 % 161989 33.57 % 114106 32.10 %
Methylated (0.7-1) 24777170 47.24 % 22823003 51.29 % 218078 45.19 % 180293 50.72 %
Median Methylation 0.670 0.710 0.650 0.700