/EXTERNAL Roadmap/K012819_1_lane_gembs

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SAMPLE K012819_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1608151170 100.00 % 804075585 100.00 % 804075585 100.00 %
General Reads 1505188601 93.60 % 755213236 93.92 % 749975365 93.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 3430471 0.21 % 1719338 0.21 % 1711133 0.21 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 99532098 6.19 % 47143011 5.86 % 52389087 6.52 %
Bisulfite_reads C2T 764337887 47.53 % 383426824 47.69 % 380911063 47.37 %
Bisulfite_reads G2A 744281185 46.28 % 373505750 46.45 % 370775435 46.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 382508277
Average Unique 47.57 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 63005337287 38.79 % 24677416266 30.39 % 38327921021 47.20 %
Base Counts Overall C 16711007256 10.29 % 1230716024 1.52 % 15480291232 19.06 %
Base Counts Overall G 18423381985 11.34 % 16475728477 20.29 % 1947653508 2.40 %
Base Counts Overall T 62049038711 38.20 % 37711093913 46.44 % 24337944798 29.97 %
Base Counts Overall N 2234502931 1.38 % 1116679405 1.38 % 1117823526 1.38 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9818775627846102
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 481013072



Mapping Quality

Mapping Quality Histogram
K012819_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012819_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012819_1969462