/EXTERNAL Roadmap/mapping_coverage/K012819_1_lane_gembs
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SAMPLE K012819_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1499634285 |
100% |
134208040455 |
100% |
| Mapped |
1453478374 |
96.92 % |
129592449355 |
96.56 % |
| Passed |
766423685 |
51.11 % |
60886980455 |
45.37 % |
| NotPassed |
687054689 |
45.81 % |
68705468900 |
51.19 % |
| |
|
|
|
|
| LowMAPQ |
493157530 |
32.89 % |
49315753000 |
36.75 % |
| MateUnmapped |
46155911 |
3.08 % |
4615591100 |
3.44 % |
| Duplicate |
6318391 |
0.42 % |
631839100 |
0.47 % |
| BadOrientation |
200 |
0.00 % |
20000 |
0.00 % |
| LargeInsertSize |
50774 |
0.00 % |
5077400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
187527794 |
12.50 % |
18752779400 |
13.97 % |
| Unmapped |
46155911 |
3.08 % |
4615591100 |
3.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76623215300 |
100% |
| Passed |
55496645164 |
72.43 % |
| Trimmed |
3192545006 |
4.17 % |
| Clipped |
910303681 |
1.19 % |
| Overlapping |
14825931164 |
19.35 % |
| LowQuality |
2197790285 |
2.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |