/EXTERNAL Roadmap/methylation/K012819_1_lane_gembs

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SAMPLE K012819_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26222281 15089031 57.54 %
NonRefCpG 235613 98417 41.77 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012819_1_lane_gembs_coverage_refCpG.png ./IMG//K012819_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012819_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012819_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012819_1_lane_gembs_quality_refcpg.png ./IMG//K012819_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012819_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10554844 20.64 % 5288127 14.81 % 103442 23.49 % 40068 15.82 %
Intermediate (0.3-0.7) 17617234 34.45 % 11415256 31.97 % 157528 35.78 % 85189 33.64 %
Methylated (0.7-1) 22973707 44.92 % 19005543 53.22 % 179338 40.73 % 128010 50.54 %
Median Methylation 0.650 0.720 0.610 0.700