/EXTERNAL Roadmap/K012806_1_lane_gembs

BACK

SAMPLE K012806_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 362228760 100.00 % 181114380 100.00 % 181114380 100.00 %
General Reads 333694627 92.12 % 168491746 93.03 % 165202881 91.21 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2008240 0.55 % 1014119 0.56 % 994121 0.55 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26525893 7.32 % 11608515 6.41 % 14917378 8.24 %
Bisulfite_reads C2T 170620196 47.10 % 86142397 47.56 % 84477799 46.64 %
Bisulfite_reads G2A 165082671 45.57 % 83363468 46.03 % 81719203 45.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 98056108
Average Unique 54.14 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14087599900 38.51 % 5572881840 30.47 % 8514718060 46.55 %
Base Counts Overall C 3773758404 10.32 % 280090200 1.53 % 3493668204 19.10 %
Base Counts Overall G 4190140667 11.45 % 3734309601 20.41 % 455831066 2.49 %
Base Counts Overall T 14055623016 38.42 % 8468178924 46.29 % 5587444092 30.54 %
Base Counts Overall N 477982773 1.31 % 237091815 1.30 % 240890958 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9831253740188265
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 118323880



Mapping Quality

Mapping Quality Histogram
K012806_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012806_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012806_1969449