/EXTERNAL Roadmap/methylation/K012806_1_lane_gembs

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SAMPLE K012806_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24958457 398525 1.60 %
NonRefCpG 439587 2110 0.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012806_1_lane_gembs_coverage_refCpG.png ./IMG//K012806_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012806_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012806_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012806_1_lane_gembs_quality_refcpg.png ./IMG//K012806_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012806_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10601309 25.04 % 195790 10.36 % 307721 39.88 % 3162 17.59 %
Intermediate (0.3-0.7) 16514277 39.01 % 514096 27.21 % 280555 36.36 % 5405 30.06 %
Methylated (0.7-1) 15218114 35.95 % 1179647 62.43 % 183331 23.76 % 9414 52.35 %
Median Methylation 0.560 0.790 0.400 0.720